Faculty
Bioactive materials
We focus on how bioactive materials form and how we can control and direct their growth. Our long-term goal is to advance the fundamental understanding of complex aggregation and crystallization pathways as a platform to design materials beneficial to humankind or suppress the growth of pathogenic structures
We dedicate our efforts to five major themes:
Molecular mechanisms of fibrillization and toxicity of amyloid b
Bioactive materials
We focus on how bioactive materials form and how we can control and direct their growth. Our long-term goal is to advance the fundamental understanding of complex aggregation and crystallization pathways as a platform to design materials beneficial to humankind or suppress the growth of pathogenic structures
We dedicate our efforts to five major themes:
Molecular mechanisms of fibrillization and toxicity of amyloid β
Amyloid fibrillization is a key step in Alzheimer’s disease pathogenesis. We test whether blocking fibril growth may be a pathway to suppressing the formation of amyloid aggregates that are toxic to the neurons in the brain. We combine thermodynamic, kinetic, and structural experiments at the single fibril level, all uniquely focused on events at the fibril tip. Besides their fundamental significance for mechanistic understanding of AD and other condensation diseases, the results of this novel approach may empower new strategies to search for potential AD drugs.
Nucleation of pharmaceutical crystals
Crystalline drugs offer the advantage of steady medication release rates. The recent discovery of nonclassical nucleation and growth pathways, in which our groups was a major player, has addressed a huge knowledge gap in understanding crystallization. These pathways involve two-step and multi-step nucleation hosted and assisted by clusters, dense liquids, and amorphous precursors. We systematically investigate nonclassical crystallization pathways. We establish new methodologies to control nucleation of organic and biological pharmaceutical compounds.
Polymorph control
A ubiquitous challenge for controlling crystallization stems from the multiple crystal structures that a compound can adopt. Polymorph transformations severely impact the design and manufacture of advanced crystalline materials. We experimentally test and validate methods to control polymorph transitions. Using machine learning, we develop an innovative methodology to predict a priori crystal structures (polymorphs and solvates) and to control intercrystalline transformations.
Control organic crystal nucleation and growth
We integrate advanced experimental and theoretical approaches to close knowledge gaps on how foreign compounds impact the nucleation growth of organic semiconductor crystals. We develop a novel mechanism to control crystal nucleation that exploits the precursors embodying the nonclassical nucleation modes; nucleation that follows a classical pathway can only be coarsely promoted. We design a strategy to irreversibly inhibit crystal growth even after the inhibitor is removed from the growth medium by manipulating the interactions of inhibitors with crystal growth precursors and with step bunches on the crystal surface. We explore interactions between pairs of inhibitors mediated by the step structures and dynamics that lead to antagonistic, additive, or synergistic cooperativities.
Hematin crystallization and malaria parasites.
During their intraerythrocytic lifecycle, malaria parasites catabolize hemoglobin and hematin, which is extremely toxic to the parasite in its free state. The main mechanism of detoxification implemented by the parasite is hematin sequestration as non-toxic, crystalline hemozoin. Hematin crystallization has been identified as the target of several antimalarial drugs, which are hypothesized to increase the concentration of free hematin within the parasite to toxic levels. The current first line of antimalarial defense are artemisinin–based combination therapies, but resistance to them is emerging. To combat the parasites’ ART resistance we put forth a covalent heme-artemisinin adduct and explore the mechanisms by which this adduct suppresses hematin crystallization and kill the malaria parasites.
- Graduate students: Manasa Yerragunta, Huan-Jui Lee, Gary Chen, Hariharan Annadurai, Hamidreza Azargoshasb
Frank Prize of the Intranational Organization for Crystal Growth, 2023
Frank L. Worley Endowed Chair, University of Houston, 2023
American Association for Crystal Growth Award, 2021
1000 Reasons to be Proud to be Bulgarian, Sofia, Bulgaria, 2021
Cullen College of Engineering Faculty Excellence Award, 2021
UH Excellence in Research, Scholarship, and Creative Achievement Award, 2019
Francqui International Professorship, Francqui Foundation, Belgium, 2014
John and Rebecca Moores Professorship, University of Houston, 2013
Senior Faculty Research Award, Cullen College of Engineering, University of Houston, 2013
Fellow, American Physical Society, Division of Biological Physics, 2010
UH Excellence in Research and Scholarship Award, 2006
DuPont Research Award, DuPont Chemical Company, 2002
UAH Foundation Research and Creative Achievement Award, 2001
International Union of Crystallography Young Scientist Award, Sixth International Conference on Crystallization of Biological Macromolecules, Hiroshima, Japan, 1995
Research Award by the International Human Frontiers Science Program, 1993 (declined)
Research Award by the Science and Technology Agency, Government of Japan, 1992
First Prize, Annual Research Session, Institute of Crystallography, Russian Acad. Sci., 1990
Shubnikov Prize of the Russian Academy of Sciences, 1986
Valedictorian (Otlichnik vypuska), School of Chemistry, M.V. Lomonosov Moscow University, 1985
Gold Medal, Ministry of Higher Education of the USSR, 1984
Diploma, Twelfth International Chemical Olympiad, Linz, Austria, 1980
Selected Publications
- Ma, W.; Balta, V.A.; Pan, W.; Rimer, J.D.; Sullivan, D.J.; Vekilov, P.G., Nonclassical mechanisms to irreversibly suppress β-hematin crystal growth. Communications Biology 6, 783, 2023
- Vekilov, P.G.; Wolynes, P.G. , Time-Resolved In Situ AFM Measurement of Growth Rates of Aβ40 Fibrils. In Protein Aggregation: Methods and Protocols, Cieplak, A.S., Ed.; Springer US: New York, NY, 2023; pp. 63-77., 2023
- D. S. Yang, A. Saeedi, A. Davtyan, M. Fathi, M.B. Sherman, M. S. Safari, A. Klindziuk, M. C. Barton, N. Varadarajan, A. B. Kolomeisky, P.G.Vekilov, Mesoscopic protein-rich clusters host the nucleation of mutant p53 amyloid fibrils. Proceedings of the National Academy of Sciences of the USA 118, e2015618118, doi:10.1073/pnas.2015618118, 2021
- W. Ma, V. Balta, R. West, K.N. Newlin, O.Š. Miljanić, D.J. Sullivan, P.G. Vekilov, J.D. Rimer, A second mechanism employed by artemisinins to suppress Plasmodium falciparum hinges on inhibition of hematin crystallization. Journal of Biological Chemistry 296, 100123, doi:https://doi.org/10.1074/jbc.RA120.016115, 2021
- Y. Xu, K. Knapp, K.N. Le, N.P. Schafer, M.S. Safari, A. Davtyan, P.G. Wolynes, P.G. Vekilov, Frustrated peptide chains at the fibril tip control the kinetics of growth of amyloid-β fibrils. Proceedings of the National Academy of Sciences of the USA 118, e2110995118, doi:10.1073/pnas.2110995118, 2021
- M. Warzecha, L. Verma, B.F.Johnston, J.C. Palmer, A.J. Florence, P.G. Vekilov, Olanzapine crystal symmetry originates in preformed centrosymmetric solute dimers. Nature Chemistry 12, 914-920, doi:10.1038/s41557-020-0542-0, 2020
- P.G. Vekilov, Non-classical nucleation. In Crystallization via Non-Classical Pathways. Volume 1: Nucleation, Assembly, Observation & Application, ACS Symposium Series; American Chemical Society: Volume 1358, pp. 19-46, 2020
- W. Ma, J.F. Lutsko, J.D. Rimer, P.G. Vekilov, Antagonistic cooperativity between crystal growth modifiers. Nature 577, 497-501, doi:10.1038/s41586-019-1918-4, 2020
- Mafimoghaddam, S.; Xu, Y.; Sherman, M.B.; Orlova, E.V.; Karki, P.; Orman, M.A.; Vekilov, P.G., Suppression of amyloid β fibril growth by drug-engineered polymorph transformation. Journal of Biological Chemistry 298, doi:10.1016/j.jbc.2022.102662.
Complete list of publications and presentations